WGS raw data of Escherichia coli Vet4 - SRA

SRX22117084: WGS raw data of Escherichia coli Vet4
1 ILLUMINA (Illumina MiSeq) run: 818,142 spots, 318.1M bases, 133.4Mb downloads

Design: DNA was extracted using Promega's Maxwell RSC Whole Blood DNA kit and the library was prepared with Illumina's Nextera DNA Flex library prep kit including Nextera DNA CD indices. Paired-end sequencing (2x250 bp) was done on a MiSeq with V2 chemistry.

Submitted by: Niedersaechsisches Landesgesundheitsamt

Study: Sequecing and assembly of colisitin-resistant mcr-1 Enterobacterales isolates from Lower Saxony, Germany

PRJNA934726 • SRP466846 • All experiments • All runs

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This study investigated the prevalence of colistine-resistant and carbapenemase-producing Enterobacterales (Col-E, CPE) on approx. 180 poultry farms in Lower Saxony (North-West Germany) as well as among directly exposed humans on these farms on a voluntary basis. Isolates from humans stool samples (farmers, relatives, workers) and farms were compared using core genome multilocus-sequence typing (cgMLST) and plasmid-typing. This study was carried out by the LAVES, NLGA and WWU in cooperation with additional partners.

Sample: Escherichia coli Vet4

SAMN37779084 • SRS19181347 • All experiments • All runs

Organism: Escherichia coli

Library:

Name: Escherichia coli Vet4

Instrument: Illumina MiSeq

Strategy: WGS

Source: GENOMIC

Selection: RANDOM PCR

Layout: PAIRED

Runs: 1 run, 818,142 spots, 318.1M bases, 133.4Mb

Run	# of Spots	# of Bases	Size	Published
SRR26411769	818,142	318.1M	133.4Mb	2023-11-15

ID:: 30057229

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